FunnyBase Expressed Gene Database
Annotated Fundulus Heteroclitus EST Gene Expression Database
RSMAS Marine Genomics Hompepage
Web Interface to the Crawford Lab Databases

Tools (table of contents)
  • Database Statistics
  • Annotation Search - Assembled ESTs
  • Browse Database
  • GO (Gene Ontology) browser
  • Blast Search
  • References, acknowledgments

  • Current Database Statistics:
    44,204 sequences
    3,774   clusters (with two or more members)
    9,042   singletons
    3,423   annotated sequences
    2,115   unique sequences with one or more GO terms assigned
    70,818 total GO terms assiged

    Assembled EST Annotation Search contigs and singletons
    (Recommended for Annotation Search)
    examples: kinase, ldh
    Contigs will contain at least one member
    from the data set/plate/well selected
    Contigs or singleton containing
    sequence name will be retrieved
    Max number of BLAST results to display per entry
    Contig Display Options:
    Display All Contig Members
    Display Minimum Cover Contig Members
    Do Not Display Contig Members (allow more records to be displayed per screen)

    Browse Sequencing Results for Individual Clones and Contigs
    Note: Wells which are included in the same contig will be displayed as separate results, as opposed to Assembled EST Annotation Search above
    Contigs will contain at least one member
    from the data set/plate/well selected
    Contigs or singleton containing
    sequence name will be retrieved
    Max number of BLAST results to display per entry
    Contig Display Options:
    Display All Contig Members
    Display Minimum Cover Contig Members
    Do Not Display Contig Members (allow more records to be displayed per screen)

    Funnybase Gene Ontology Browser
    Sort GO terms alphabetically
    Sort by number of clusters annotated with GO term (default)

    Biological Process: